Once the bellhousing is repaired/replaced I'd do dummy run assemblies and add components on each try until the problem appears.
From here, input shaft not seating in pilot bush and/or bent input shaft look to be suspects. Can the input shaft work its way forwards out of the gearbox?
From here, input shaft not seating in pilot bush and/or bent input shaft look to be suspects. Can the input shaft work its way forwards out of the gearbox?