That's right. The single catalyst Vortec smaller engines do have 3 upstream sensors that sample left, right and combined pre catalyst. Then a single downstream post cat sensor.
I was made aware a bit ago, as I thought all Vortecs were dual pipes, dual catalyst, into a single muffler and tailpipe.
@supspt454 have your tuner remove the 3rd O2 sensor PID in the PCM. Use 2 up and 1 down sensors. Then cover the pigtail, maybe even cut the sensor side wires and cap them off to protect the pins in the pigtail.