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By reflash do you mean it was modified by a performance shop?
I'd call them up.
a shop or someone with a TECH2 should be able to do it..
its probably going into some kind of limp mode, it doesn't know what position the crank is in and therefore its having issues trying to control the spark and injection, etc, sometimes they run fine without doing a CASE relearn, sometimes they don't...it shouldn't take a shop more than like 5-10 minutes to do it. just make sure they're ONLY doing a CASE relearn, not a reflash, the tech2 can also reflash a PCM back to stock, you don't want that since you spent your money on a tune for it.